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    TLP1 THAUMATIN-LIKE PROTEIN 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828519, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TLP1
    Official Full Name
    THAUMATIN-LIKE PROTEIN 1
    Primary source
    TAIR:AT4G24180
    Locus tag
    AT4G24180
    See related
    Araport:AT4G24180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATTLP1; T22A6.10; T22A6_10; THAUMATIN-LIKE PROTEIN 1
    Summary
    Root-specific expression activated in response to rhizobacteria and ACC. Role in induced systemic resistance.
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    Genomic context

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    See TLP1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (12549700..12551378, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ATP binding microtubule motor family protein Neighboring gene kinesin-like protein Neighboring gene Chaperone protein htpG family protein Neighboring gene Transcription elongation factor (TFIIS) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Colonization of the Arabidopsis rhizosphere by fluorescent Pseudomonas spp. activates a root-specific, ethylene-responsive PR-5 gene in the vascular bundle. Léon-Kloosterziel KM, et al. Plant Mol Biol, 2005 Mar. PMID 15988566
    2. Thaumatin-like genes function in the control of both biotic stress signaling and ABA signaling pathways. Park EJ, et al. Biochem Biophys Res Commun, 2021 Aug 27. PMID 34130180
    3. New insights into the subcellular localization of Tubby-like proteins and their participation in the Arabidopsis-Piriformospora indica interaction. Reitz MU, et al. Plant Signal Behav, 2013 Aug. PMID 23733076, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Thaumatin-like genes function in the control of both biotic stress signaling and ABA signaling pathways.
      Title: Thaumatin-like genes function in the control of both biotic stress signaling and ABA signaling pathways.
    2. the involvement of another two AtTLPs in Arabidopsis-Piriformospora indica interaction, is reported.
      Title: New insights into the subcellular localization of Tubby-like proteins and their participation in the Arabidopsis-Piriformospora indica interaction.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001341648.1
    NM_001341651.1
    NM_001341652.1
    NM_118551.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    NOT involved_in induced systemic resistance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within induced systemic resistance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to bacterium IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to ethylene IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in response to ethylene IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    THAUMATIN-LIKE PROTEIN 1
    NP_001320053.1
    • THAUMATIN-LIKE PROTEIN 1 (TLP1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, response to other organism, induced systemic resistance, response to bacterium; LOCATED IN: endomembrane system; EXPRESSED IN: root vascular system; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G38660.1); Has 1607 Blast hits to 1581 proteins in 180 species: Archae - 0; Bacteria - 47; Metazoa - 54; Fungi - 78; Plants - 1413; Viruses - 3; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12549700..12551378 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341649.1 → NP_001328600.1  THAUMATIN-LIKE PROTEIN 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B562, A0A7G2F0H3
      Conserved Domains (1) summary
      pfam00314
      Location:34 → 251
      Thaumatin; Thaumatin family

    2. NM_001341650.1 → NP_001328601.1  THAUMATIN-LIKE PROTEIN 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B570, A0A654FS94

    3. NM_001341648.1 → NP_001320053.1  THAUMATIN-LIKE PROTEIN 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWR9, F4JQ53
      Conserved Domains (1) summary
      pfam00314
      Location:39 → 256
      Thaumatin; Thaumatin family

    4. NM_001341651.1 → NP_001328598.1  THAUMATIN-LIKE PROTEIN 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B549, A0A654FS94

    5. NM_001341652.1 → NP_001328599.1  THAUMATIN-LIKE PROTEIN 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UY63, A0A5S9XXI8
      Conserved Domains (1) summary
      pfam00314
      Location:34 → 251
      Thaumatin; Thaumatin family

    6. NM_118551.3 → NP_194149.2  THAUMATIN-LIKE PROTEIN 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194149.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8B554, O22973, Q9STX6
      UniProtKB/TrEMBL
      A0A178UWR4
      Conserved Domains (1) summary
      pfam00314
      Location:39 → 256
      Thaumatin; Thaumatin family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A1P8B554.1

    Gene LinkOut

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