Ankyrin repeat family protein / BTB/POZ domain-containing protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Ankyrin repeat family protein / BTB/POZ domain-containing protein
Primary source: TAIR:AT4G26120
Locus tag: AT4G26120
See related: Araport:AT4G26120
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F20B18.230; F20B18_230
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 4

Sequence:: Chromosome: 4; NC_003075.7 (13236253..13238818)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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NM_118745.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info
involved_in regulation of jasmonic acid mediated signaling pathway	IEA Inferred from Electronic Annotation more info
involved_in regulation of salicylic acid mediated signaling pathway	IEA Inferred from Electronic Annotation more info
involved_in systemic acquired resistance, salicylic acid mediated signaling pathway	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Ankyrin repeat family protein / BTB/POZ domain-containing protein

NP_194342.1

Ankyrin repeat family protein / BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), NPR1/NIM1 like, C-terminal (InterPro:IPR021094), BTB/POZ fold (InterPro:IPR011333), Ankyrin repeat-containing domain (InterPro:IPR020683), BTB/POZ-like (InterPro:IPR000210), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: regulatory protein (NPR1) (TAIR:AT1G64280.1); Has 2068 Blast hits to 1653 proteins in 155 species: Archae - 0; Bacteria - 76; Metazoa - 627; Fungi - 31; Plants - 645; Viruses - 9; Other Eukaryotes - 680 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

13236253..13238818

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001341776.1 → NP_001329623.1 Ankyrin repeat family protein / BTB/POZ domain-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UV56, A0A1P8B8B0, A0A384L3C8, A0A5S9XWM9

Conserved Domains (5) summary

sd00045
Location:288 → 326

ANK; ANK repeat [structural motif]

pfam11900
Location:231 → 271

DUF3420; Domain of unknown function (DUF3420)

cd18310
Location:50 → 194

BTB_POZ_NPR_plant; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in plant regulatory proteins, NPR1-4, and similar proteins

pfam12313
Location:370 → 573

NPR1_like_C; NPR1/NIM1 like defense protein C terminal

pfam12796
Location:273 → 355

Ank_2; Ankyrin repeats (3 copies)
NM_118745.2 → NP_194342.1 Ankyrin repeat family protein / BTB/POZ domain-containing protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_194342.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9SZI3

UniProtKB/TrEMBL

A0A5S9XWM9

Conserved Domains (7) summary

pfam11900
Location:230 → 270

DUF3420; Domain of unknown function (DUF3420)

smart00225
Location:68 → 191

BTB; Broad-Complex, Tramtrack and Bric a brac

cd00204
Location:269 → 365

ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...

pfam12313
Location:369 → 563

NPR1_like_C; NPR1/NIM1 like defence protein C terminal

pfam12796
Location:269 → 354

Ank_2; Ankyrin repeats (3 copies)

sd00045
Location:287 → 325

ANK; ANK repeat [structural motif]

cl02518
Location:63 → 187

BTB; BTB/POZ domain