GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: GDSL-like Lipase/Acylhydrolase superfamily protein
Primary source: TAIR:AT4G28780
Locus tag: AT4G28780
See related: Araport:AT4G28780
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F16A16.110; F16A16_110
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 5

Sequence:: Chromosome: 4; NC_003075.7 (14215473..14217909)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_119022.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables hydrolase activity, acting on ester bonds	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: GDSL-like Lipase/Acylhydrolase superfamily protein

NP_194607.1

GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: Li-tolerant lipase 1 (TAIR:AT3G04290.1); Has 3338 Blast hits to 3300 proteins in 166 species: Archae - 0; Bacteria - 226; Metazoa - 0; Fungi - 7; Plants - 3087; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

14215473..14217909

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_119022.3 → NP_194607.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_194607.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9SVU5

UniProtKB/TrEMBL

A0A178UXD1, A0A5S9XWU9

Conserved Domains (1) summary

cd01837
Location:31 → 348

SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...