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    Sec23/Sec24 protein transport family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829399, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Sec23/Sec24 protein transport family protein
    Primary source
    TAIR:AT4G32640
    Locus tag
    AT4G32640
    See related
    Araport:AT4G32640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4D11.160; F4D11_160
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    25
    Sequence:
    Chromosome: 4; NC_003075.7 (15742001..15750862)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Enhancer of polycomb-like transcription factor protein Neighboring gene ArfGap/RecO-like zinc finger domain-containing protein Neighboring gene potassium channel protein Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001125629.5
    NM_119416.8

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    Sec23/Sec24 protein transport family protein
    NP_001119101.5
    • Sec23/Sec24 protein transport family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular protein transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: clone eighty-four (TAIR:AT3G44340.1); Has 66049 Blast hits to 38054 proteins in 1391 species: Archae - 34; Bacteria - 8764; Metazoa - 33131; Fungi - 9611; Plants - 5387; Viruses - 1213; Other Eukaryotes - 7909 (source: NCBI BLink).
    NP_194990.5
    • Sec23/Sec24 protein transport family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular protein transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: clone eighty-four (TAIR:AT3G44340.1); Has 66049 Blast hits to 38054 proteins in 1391 species: Archae - 34; Bacteria - 8764; Metazoa - 33131; Fungi - 9611; Plants - 5387; Viruses - 1213; Other Eukaryotes - 7909 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15742001..15750862
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125629.5 → NP_001119101.5  Sec23/Sec24 protein transport family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119101.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JV31, O65535, Q9M081
      UniProtKB/TrEMBL
      A0A5S9Y073, A0A654FVE1, R4WCW1
      Conserved Domains (2) summary
      PHA03247
      Location:65 → 345
      PHA03247; large tegument protein UL36; Provisional
      COG5028
      Location:273 → 1076
      COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

    2. NM_119416.8 → NP_194990.5  Sec23/Sec24 protein transport family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194990.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JV31, O65535, Q9M081
      UniProtKB/TrEMBL
      A0A5S9Y073, A0A654FVE1, R4WCW1
      Conserved Domains (2) summary
      PHA03247
      Location:65 → 345
      PHA03247; large tegument protein UL36; Provisional
      COG5028
      Location:273 → 1076
      COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M081.3

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