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    CBS domain protein (DUF21) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829512, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CBS domain protein (DUF21)
    Primary source
    TAIR:AT4G33700
    Locus tag
    AT4G33700
    See related
    Araport:AT4G33700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16L1.190; T16L1_190
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    12
    Sequence:
    Chromosome: 4; NC_003075.7 (16176232..16179481, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene NAD(P)-linked oxidoreductase superfamily protein Neighboring gene ncRNA Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene G patch domain protein Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001342227.1
    NM_001342228.1
    NM_119528.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in magnesium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CBS domain protein (DUF21)
    NP_195096.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT2G14520.1); Has 13295 Blast hits to 13266 proteins in 2597 species: Archae - 106; Bacteria - 10306; Metazoa - 262; Fungi - 156; Plants - 233; Viruses - 0; Other Eukaryotes - 2232 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16176232..16179481 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119528.4 → NP_195096.2  CBS domain protein (DUF21) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195096.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81887, Q8VZI2
      UniProtKB/TrEMBL
      A0A178V5M0, A0A5S9XYB5, A0A7G2F9K0
      Conserved Domains (1) summary
      COG1253
      Location:10 → 308
      TlyC; Hemolysin or related protein, contains CBS domains [General function prediction only]

    2. NM_001342227.1 → NP_001328097.1  CBS domain protein (DUF21) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3L6, C0Z244

    3. NM_001342228.1 → NP_001328098.1  CBS domain protein (DUF21) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3M0, A0A7G2F9K0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VZI2.1

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