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    CSLD4 cellulose synthase like D4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829975, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CSLD4
    Official Full Name
    cellulose synthase like D4
    Primary source
    TAIR:AT4G38190
    Locus tag
    AT4G38190
    See related
    Araport:AT4G38190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4; ATCSLD4; cellulose synthase like D4; F20D10.310; F20D10_310
    Summary
    encodes a gene similar to cellulose synthase
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    Genomic context

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    See CSLD4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (17909832..17913790, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene FAR1-related sequence 9 Neighboring gene FAR1-related sequence 5 Neighboring gene ncRNA Neighboring gene SEC7-like guanine nucleotide exchange family protein Neighboring gene ncRNA Neighboring gene expansin A20

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis CSLD1 and CSLD4 are required for cellulose deposition and normal growth of pollen tubes. Wang W, et al. J Exp Bot, 2011 Oct. PMID 21765162, Free PMC Article
    2. Functional analysis of the cellulose synthase-like genes CSLD1, CSLD2, and CSLD4 in tip-growing Arabidopsis cells. Bernal AJ, et al. Plant Physiol, 2008 Nov. PMID 18768911, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CSLD1 and CSLD4 are required for cellulose deposition and normal growth.
      Title: Arabidopsis CSLD1 and CSLD4 are required for cellulose deposition and normal growth of pollen tubes.
    2. Mutants in CSLD1 and CSLD4 had a defect in male transmission, and plants heterozygous for insertions in CSLD1 or CSLD4 were defective in their ability to produce pollen tubes, although the number and morphology of pollen grains was normal
      Title: Functional analysis of the cellulose synthase-like genes CSLD1, CSLD2, and CSLD4 in tip-growing Arabidopsis cells.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_119980.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cellulose synthase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pollen germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cellulose synthase like D4
    NP_195532.1
    • cellulose synthase like D4 (CSLD4); CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 3503 Blast hits to 2866 proteins in 674 species: Archae - 22; Bacteria - 1611; Metazoa - 5; Fungi - 10; Plants - 1761; Viruses - 2; Other Eukaryotes - 92 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17909832..17913790 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119980.3 → NP_195532.1  cellulose synthase like D4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195532.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84TI9, Q9SZL9
      UniProtKB/TrEMBL
      A0A178V4N2, A0A384KGF9, A0A5S9XZN4, W8PV30
      Conserved Domains (1) summary
      PLN02248
      Location:1 → 1111
      PLN02248; cellulose synthase-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZL9.1

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