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    GH9B18 glycosyl hydrolase 9B18 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830056, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GH9B18
    Official Full Name
    glycosyl hydrolase 9B18
    Primary source
    TAIR:AT4G39010
    Locus tag
    AT4G39010
    See related
    Araport:AT4G39010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtGH9B18; F19H22.110; F19H22_110; glycosyl hydrolase 9B18
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    Genomic context

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    See GH9B18 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (18175900..18179266, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene glycosyl hydrolase 9B16 Neighboring gene glycosyl hydrolase 9B17 Neighboring gene SH3 domain-containing protein Neighboring gene MATE efflux family protein Neighboring gene RNA-binding CRS1 / YhbY (CRM) domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CELLULASE6 and MANNANASE7 Affect Cell Differentiation and Silique Dehiscence. He H, et al. Plant Physiol, 2018 Mar. PMID 29348141, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001342522.1
    NM_120061.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cellulase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within fruit dehiscence IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within fruit valve development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within plant-type cell wall loosening IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glycosyl hydrolase 9B18
    NP_568050.1
    • glycosyl hydrolase 9B18 (GH9B18); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B17 (TAIR:AT4G39000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18175900..18179266 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120061.2 → NP_568050.1  glycosyl hydrolase 9B18 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568050.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93YQ7, Q9SVJ2
      UniProtKB/TrEMBL
      A0A178V4U3
      Conserved Domains (1) summary
      PLN03009
      Location:2 → 497
      PLN03009; cellulase

    2. NM_001342522.1 → NP_001329800.1  glycosyl hydrolase 9B18 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B8U0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93YQ7.1

    Gene LinkOut

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