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    signal transducer, putative (DUF3550/UPF0682) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830168, updated on 18-Sep-2024

    Summary

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    Official Full Name
    signal transducer, putative (DUF3550/UPF0682)
    Primary source
    TAIR:AT4G40050
    Locus tag
    AT4G40050
    See related
    Araport:AT4G40050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5J17.220; T5J17_220
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (18560855..18563987, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Microsomal signal peptidase 12 kDa subunit (SPC12) Neighboring gene uncharacterized protein Neighboring gene homeobox protein 16 Neighboring gene ncRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_120170.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    signal transducer, putative (DUF3550/UPF0682)
    NP_568079.1
    • FUNCTIONS IN: signal transducer activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP013022 (InterPro:IPR016607), Regulator of G protein signalling (InterPro:IPR000342); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3550/UPF0682) (TAIR:AT3G03570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18560855..18563987 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342566.1 → NP_001328204.1  signal transducer, putative (DUF3550/UPF0682) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3V4

    2. NM_120170.3 → NP_568079.1  signal transducer, putative (DUF3550/UPF0682) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568079.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZD9, A0A5S9Y099, Q94BN1
      Conserved Domains (1) summary
      pfam12070
      Location:12 → 552
      DUF3550; Protein of unknown function (DUF3550/UPF0682)
    Nucleotide Protein
    Heading Accession and Version

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