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    GNAT acetyltransferase (DUF699) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824963, updated on 18-Sep-2024

    Summary

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    Official Full Name
    GNAT acetyltransferase (DUF699)
    Primary source
    TAIR:AT3G57940
    Locus tag
    AT3G57940
    See related
    Araport:AT3G57940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    26
    Sequence:
    Chromosome: 3; NC_003074.8 (21449254..21456026)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene D111/G-patch domain-containing protein Neighboring gene squamosa promoter binding protein-like 15 Neighboring gene rho GTPase-activating gacO-like protein Neighboring gene cotton fiber protein Neighboring gene Emsy N Terminus (ENT) domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. N4-acetylation of cytidine in mRNA plays essential roles in plants. Wang W, et al. Plant Cell, 2023 Sep 27. PMID 37367221, Free PMC Article
    2. Transcriptome-wide profiling of RNA N(4)-cytidine acetylation in Arabidopsis thaliana and Oryza sativa. Li B, et al. Mol Plant, 2023 Jun 5. PMID 37073130
    3. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203192.1
    NM_115656.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA N-acetyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GNAT acetyltransferase (DUF699)
    NP_001190121.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1726 (InterPro:IPR013562), Domain of unknown function DUF699, exodeoxyribonuclease V alpha chain (InterPro:IPR007807); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1726); Putative ATPase (DUF699) (TAIR:AT1G10490.1).
    NP_191353.2
    • CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1726 (InterPro:IPR013562), Domain of unknown function DUF699, exodeoxyribonuclease V alpha chain (InterPro:IPR007807); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1726); Putative ATPase (DUF699) (TAIR:AT1G10490.1); Has 1409 Blast hits to 1357 proteins in 630 species: Archae - 151; Bacteria - 717; Metazoa - 171; Fungi - 150; Plants - 51; Viruses - 3; Other Eukaryotes - 166 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21449254..21456026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115656.4 → NP_191353.2  GNAT acetyltransferase (DUF699) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191353.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WNS9, Q9M2Q4
      UniProtKB/TrEMBL
      A0A5S9XLT2
      Conserved Domains (1) summary
      COG1444
      Location:20 → 912
      TmcA; tRNA(Met) C34 N-acetyltransferase TmcA [Translation, ribosomal structure and biogenesis]

    2. NM_001203192.1 → NP_001190121.1  GNAT acetyltransferase (DUF699) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190121.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XLT2, F4J4L4
      Conserved Domains (5) summary
      COG1444
      Location:20 → 907
      TmcA; tRNA(Met) C34 N-acetyltransferase TmcA [Translation, ribosomal structure and biogenesis]
      pfam05127
      Location:280 → 476
      Helicase_RecD; Helicase
      pfam08351
      Location:106 → 200
      DUF1726; Domain of unknown function (DUF1726)
      pfam13718
      Location:516 → 739
      GNAT_acetyltr_2; GNAT acetyltransferase 2
      pfam13725
      Location:766 → 881
      tRNA_bind_2; Possible tRNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M2Q4.2

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