U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PP2-A13 phloem protein 2-A13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825278, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PP2-A13
    Official Full Name
    phloem protein 2-A13
    Primary source
    TAIR:AT3G61060
    Locus tag
    AT3G61060
    See related
    Araport:AT3G61060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPP2-A13; phloem protein 2-A13
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PP2-A13 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (22602816..22604582)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 76, subfamily C, polypeptide 7 Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene peroxin 11E Neighboring gene Protein kinase superfamily protein Neighboring gene Putative endonuclease or glycosyl hydrolase Neighboring gene Putative endonuclease or glycosyl hydrolase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A metabolic daylength measurement system mediates winter photoperiodism in plants. Liu W, et al. Dev Cell, 2021 Sep 13. PMID 34407427, Free PMC Article
    2. Mechanical stress induces biotic and abiotic stress responses via a novel cis-element. Walley JW, et al. PLoS Genet, 2007 Oct. PMID 17953483, Free PMC Article
    3. The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis. Gagne JM, et al. Proc Natl Acad Sci U S A, 2002 Aug 20. PMID 12169662, Free PMC Article
    4. Diversity of the superfamily of phloem lectins (phloem protein 2) in angiosperms. Dinant S, et al. Plant Physiol, 2003 Jan. PMID 12529520, Free PMC Article
    5. Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis. Risseeuw EP, et al. Plant J, 2003 Jun. PMID 12795696

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_115970.4
    NM_202741.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of leaf senescence IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    phloem protein 2-A13
    NP_567108.2
    • phloem protein 2-A13 (PP2-A13); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: N-terminal protein myristoylation, response to wounding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-A12 (TAIR:AT1G12710.1); Has 444 Blast hits to 438 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 444; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_974470.1
    • phloem protein 2-A13 (PP2-A13); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-A12 (TAIR:AT1G12710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22602816..22604582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115970.4 → NP_567108.2  phloem protein 2-A13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567108.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3EAG4, Q94CC2, Q9LEX0
      UniProtKB/TrEMBL
      A0A178VMP9, A0A5S9XMN0, A0A654FJM4
      Conserved Domains (2) summary
      pfam12937
      Location:25 → 65
      F-box-like
      pfam14299
      Location:121 → 279
      PP2; Phloem protein 2

    2. NM_202741.1 → NP_974470.1  phloem protein 2-A13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974470.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKQ0, F4JD33
      Conserved Domains (2) summary
      pfam00646
      Location:24 → 69
      F-box; F-box domain
      pfam14299
      Location:122 → 280
      PP2; Phloem protein 2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LEX0.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools