U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    GDPD6 PLC-like phosphodiesterases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830697, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    GDPD6
    Official Full Name
    PLC-like phosphodiesterases superfamily protein
    Primary source
    TAIR:AT5G08030
    Locus tag
    AT5G08030
    See related
    Araport:AT5G08030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtGDPD6; glycerophosphodiester phosphodiesterase 6; T22D6.1
    Summary
    Encodes a member of the glycerophosphodiester phosphodiesterase (GDPD) family.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See GDPD6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (2575025..2576819, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene flavonoid protein Neighboring gene uncharacterized protein Neighboring gene RPA70-kDa subunit B Neighboring gene mitochondrial import receptor subunit TOM5-like protein Neighboring gene wiskott-aldrich syndrome family protein, putative (DUF1118) Neighboring gene Defensin-like (DEFL) family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_120885.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycerophosphodiester phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    PLC-like phosphodiesterases superfamily protein
    NP_196420.1
    • PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT1G74210.1); Has 6803 Blast hits to 6670 proteins in 1728 species: Archae - 62; Bacteria - 5228; Metazoa - 196; Fungi - 127; Plants - 339; Viruses - 7; Other Eukaryotes - 844 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2575025..2576819 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342976.1 → NP_001331075.1  PLC-like phosphodiesterases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCR6, A0A5S9Y379
      Conserved Domains (1) summary
      cd08602
      Location:59 → 370
      GDPD_ScGlpQ1_like; Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins

    2. NM_120885.4 → NP_196420.1  PLC-like phosphodiesterases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196420.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SD81
      UniProtKB/TrEMBL
      A0A178UC11
      Conserved Domains (1) summary
      cd08602
      Location:44 → 355
      GDPD_ScGlpQ1_like; Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SD81.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools