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    Octicosapeptide/Phox/Bem1p family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830821, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Octicosapeptide/Phox/Bem1p family protein
    Primary source
    TAIR:AT5G09620
    Locus tag
    AT5G09620
    See related
    Araport:AT5G09620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17I14.190; F17I14_190
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (2983448..2985760, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene mitochondrial HSO70 2 Neighboring gene succinate dehydrogenase 3-1 Neighboring gene pumilio 21 Neighboring gene LisH/CRA/RING-U-box domains-containing protein Neighboring gene serine carboxypeptidase-like 19 Neighboring gene pyrophosphorylase 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001343053.1
    NM_120999.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    Octicosapeptide/Phox/Bem1p family protein
    NP_196524.1
    • Octicosapeptide/Phox/Bem1p family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT5G64430.1); Has 18668 Blast hits to 11149 proteins in 562 species: Archae - 0; Bacteria - 597; Metazoa - 7421; Fungi - 2059; Plants - 1927; Viruses - 138; Other Eukaryotes - 6526 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2983448..2985760 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120999.3 → NP_196524.1  Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196524.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UA03, A0A5S9Y2R2, Q9LXC6
      Conserved Domains (1) summary
      cd06410
      Location:43 → 145
      PB1_UP2; Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. ...

    2. NM_001343053.1 → NP_001330955.1  Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UA03, A0A1P8BCE3, A0A5S9Y2R2
    Nucleotide Protein
    Heading Accession and Version

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