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    SDG40 SET domain group 40 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831588, updated on 18-Sep-2024

    Summary

    Official Symbol
    SDG40
    Official Full Name
    SET domain group 40
    Primary source
    TAIR:AT5G17240
    Locus tag
    AT5G17240
    See related
    Araport:AT5G17240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MKP11.9; MKP11_9; SET domain group 40
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    Genomic context

    See SDG40 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (5666823..5668907)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF1218) Neighboring gene glutathione S-transferase phi 12 Neighboring gene PHYTOENE SYNTHASE Neighboring gene Alkaline-phosphatase-like family protein Neighboring gene ncRNA Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    SET domain group 40
    NP_197226.2
    • SET domain group 40 (SDG40); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT3G55080.1); Has 770 Blast hits to 763 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 160; Plants - 288; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5666823..5668907
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343485.1NP_001330251.1  SET domain group 40 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UET9, A0A1P8BA78, A0A5S9Y568
    2. NM_121730.4NP_197226.2  SET domain group 40 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197226.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NQJ8, Q9FFI7
      UniProtKB/TrEMBL
      A0A178UET9, A0A5S9Y568
      Conserved Domains (1) summary
      pfam00856
      Location:48126
      SET; SET domain