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    transmembrane protein, putative (DUF1218) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831585, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF1218)
    Primary source
    TAIR:AT5G17210
    Locus tag
    AT5G17210
    See related
    Araport:AT5G17210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MKP11.6; MKP11_6
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (5656348..5658193)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene B-cell receptor-associated-like protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene glutathione S-transferase phi 12 Neighboring gene PHYTOENE SYNTHASE Neighboring gene SET domain group 40

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001343482.1
    NM_121727.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF1218)
    NP_001318579.1
    • Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT1G61065.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_568343.1
    • Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT1G61065.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5656348..5658193
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121727.3 → NP_568343.1  transmembrane protein, putative (DUF1218) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568343.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UPP0, A0A7G2FAB2, Q94C50
      Conserved Domains (1) summary
      pfam06749
      Location:61 → 155
      DUF1218; Protein of unknown function (DUF1218)

    2. NM_001343482.1 → NP_001318579.1  transmembrane protein, putative (DUF1218) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KGX3, Q9FFI8
    Nucleotide Protein
    Heading Accession and Version

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