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    GTP-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833993, updated on 18-Sep-2024

    Summary

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    Official Full Name
    GTP-binding protein
    Primary source
    TAIR:AT5G39960
    Locus tag
    AT5G39960
    See related
    Araport:AT5G39960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MYH19.120; MYH19_120
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (15993953..15997058)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene thioredoxin 2 Neighboring gene pseudo Neighboring gene catalytics Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Narsai R, et al. Plant Physiol, 2011 Nov. PMID 21908688, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123359.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    GTP-binding protein
    NP_198812.3
    • GTP binding;GTP binding; FUNCTIONS IN: GTP binding; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding, EngA (InterPro:IPR016484), Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), Guanylate kinase (InterPro:IPR008144), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT3G12080.1); Has 25797 Blast hits to 22413 proteins in 2944 species: Archae - 203; Bacteria - 19262; Metazoa - 305; Fungi - 220; Plants - 200; Viruses - 0; Other Eukaryotes - 5607 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15993953..15997058
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123359.4 → NP_198812.3  GTP-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198812.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UPY4, A0A654G6H2, F4KFX1
      Conserved Domains (1) summary
      PRK00093
      Location:117 → 584
      PRK00093; GTP-binding protein Der; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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