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    nucleolar/coiled-body phosphoprotein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835816, updated on 18-Sep-2024

    Summary

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    Official Full Name
    nucleolar/coiled-body phosphoprotein
    Primary source
    TAIR:AT5G57120
    Locus tag
    AT5G57120
    See related
    Araport:AT5G57120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUL3.6; MUL3_6
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (23122488..23124594, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Nucleotide/sugar transporter family protein Neighboring gene autoinhibited Ca2+ -ATPase Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001345243.1
    NM_125094.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleolus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nucleolar/coiled-body phosphoprotein
    NP_200522.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23122488..23124594 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125094.3 → NP_200522.1  nucleolar/coiled-body phosphoprotein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200522.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMD7, Q8LFX8, Q9LU74
      Conserved Domains (2) summary
      smart00667
      Location:13 → 46
      LisH; Lissencephaly type-1-like homology motif
      pfam05022
      Location:253 → 323
      SRP40_C; SRP40, C-terminal domain

    2. NM_001345243.1 → NP_001332738.1  nucleolar/coiled-body phosphoprotein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1R7T3I7, A0A7G2FN28
    Nucleotide Protein
    Heading Accession and Version

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