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    YKT61 SNARE-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835918, updated on 9-Oct-2024

    Summary

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    Official Symbol
    YKT61
    Official Full Name
    SNARE-like superfamily protein
    Primary source
    TAIR:AT5G58060
    Locus tag
    AT5G58060
    See related
    Araport:AT5G58060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATGP1; ATYKT61; K21L19.5; K21L19_5
    Summary
    member of YKT6 Gene Family
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    Genomic context

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    See YKT61 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (23498139..23500384)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RTF2 RING-finger protein Neighboring gene Transport protein particle (TRAPP) component Neighboring gene FIP1[V]-like protein Neighboring gene SHV3-like 4 Neighboring gene temperature-induced lipocalin Neighboring gene response regulator 18 Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. S-acylation of YKT61 modulates its unconventional participation in the formation of SNARE complexes in Arabidopsis. Ma T, et al. J Genet Genomics, 2024 Oct. PMID 38642801
    2. The Arabidopsis R-SNARE protein YKT61 is essential for gametophyte development. Ma T, et al. J Integr Plant Biol, 2021 Apr. PMID 32918784
    3. R-SNARE protein YKT61 mediates root apical meristem cell division via BRASSINOSTEROID-INSENSITIVE1 recycling. Ma T, et al. Plant Physiol, 2024 Feb 29. PMID 38036295
    4. YKT6 is a core constituent of membrane fusion machineries at the Arabidopsis trans-Golgi network. Chen Y, et al. J Mol Biol, 2005 Jul 1. PMID 15919093
    5. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. S-acylation of YKT61 modulates its unconventional participation in the formation of SNARE complexes in Arabidopsis.
      Title: S-acylation of YKT61 modulates its unconventional participation in the formation of SNARE complexes in Arabidopsis.
    2. R-SNARE protein YKT61 mediates root apical meristem cell division via BRASSINOSTEROID-INSENSITIVE1 recycling.
      Title: R-SNARE protein YKT61 mediates root apical meristem cell division via BRASSINOSTEROID-INSENSITIVE1 recycling.
    3. YKT61 and YKT62 interact with SYP41 and are essential for membrane fusion mediated by either SYP41 or SYP61 [YKT61]
      Title: YKT6 is a core constituent of membrane fusion machineries at the Arabidopsis trans-Golgi network.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001161313.1
    NM_125191.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNARE binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in vesicle fusion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    part_of SNARE complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid HDA PubMed 
    located_in vesicle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SNARE-like superfamily protein
    NP_001154785.1
    • YKT61; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Synaptobrevin family protein (TAIR:AT5G58180.2); Has 1363 Blast hits to 1363 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 381; Fungi - 253; Plants - 448; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).
    NP_200614.1
    • YKT61; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Synaptobrevin family protein (TAIR:AT5G58180.2); Has 1443 Blast hits to 1443 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 302; Plants - 452; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23498139..23500384
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001161313.1 → NP_001154785.1  SNARE-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154785.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FKZ8, F4KDI1
      Conserved Domains (3) summary
      COG5143
      Location:1 → 220
      SNC1; Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
      cd15867
      Location:159 → 219
      R-SNARE_YKT6; SNARE motif of YKT6
      pfam13774
      Location:47 → 131
      Longin; Regulated-SNARE-like domain

    2. NM_125191.4 → NP_200614.1  SNARE-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200614.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZRD6
      UniProtKB/TrEMBL
      A0A178UM80, A0A5S9YFJ5, A0A7G2FKZ8
      Conserved Domains (1) summary
      COG5143
      Location:1 → 198
      SNC1; Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZRD6.1

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