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    TIM-barrel signal transduction protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836774, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TIM-barrel signal transduction protein
    Primary source
    TAIR:AT5G66420
    Locus tag
    AT5G66420
    See related
    Araport:AT5G66420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K1F13.7; K1F13_7
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (26521674..26525177, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Peroxidase superfamily protein Neighboring gene Dehydrin family protein Neighboring gene thioredoxin domain PLP3B-like protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene tRNA-methyltransferase non-catalytic subunit trm6MTase subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001037086.2
    NM_001345760.1
    NM_126040.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate derivative binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate derivative metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    TIM-barrel signal transduction protein
    NP_001032163.1
    • LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 1232 Blast hits to 1230 proteins in 311 species: Archae - 18; Bacteria - 959; Metazoa - 1; Fungi - 84; Plants - 42; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).
    NP_569034.1
    • CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26521674..26525177 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001037086.2 → NP_001032163.1  TIM-barrel signal transduction protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032163.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIK5, A0A5S9YHT3, Q9FJZ7
      Conserved Domains (2) summary
      pfam06792
      Location:7 → 429
      UPF0261; uncharacterized protein family (UPF0261)
      pfam09370
      Location:509 → 750
      PEP_hydrolase; Phosphoenolpyruvate hydrolase-like

    2. NM_126040.4 → NP_569034.1  TIM-barrel signal transduction protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_569034.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FJC7, Q94JM0
      Conserved Domains (2) summary
      pfam06792
      Location:1 → 330
      UPF0261; uncharacterized protein family (UPF0261)
      pfam09370
      Location:410 → 651
      PEP_hydrolase; Phosphoenolpyruvate hydrolase-like

    3. NM_001345760.1 → NP_001330244.1  TIM-barrel signal transduction protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIK5, A0A1P8BA73, A0A5S9YHT3
    Nucleotide Protein
    Heading Accession and Version

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