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    Plastid-lipid associated protein PAP / fibrillin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832116, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plastid-lipid associated protein PAP / fibrillin family protein
    Primary source
    TAIR:AT5G19940
    Locus tag
    AT5G19940
    See related
    Araport:AT5G19940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28I16.90; F28I16_90
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (6739624..6740957)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene integral membrane protein (Protein of unknown function DUF92, transmembrane) Neighboring gene tudor domain protein (DUF1767) Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene GRAS family transcription factor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Lack of FIBRILLIN6 in Arabidopsis thaliana affects light acclimation and sulfate metabolism. Lee K, et al. New Phytol, 2020 Feb. PMID 31596965
    2. Arabidopsis FIBRILLIN6 influences carotenoid biosynthesis by directly promoting phytoene synthase activity. Iglesias-Sanchez A, et al. Plant Physiol, 2024 Feb 29. PMID 37966976, Free PMC Article
    3. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Ferro M, et al. Mol Cell Proteomics, 2003 May. PMID 12766230
    4. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
    5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_001161250.1
    NM_122001.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast thylakoid HDA PubMed 
    located_in plastid HDA PubMed 
    located_in plastoglobule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in thylakoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Plastid-lipid associated protein PAP / fibrillin family protein
    NP_001154722.1
    • Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_197494.1
    • Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: Plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6739624..6740957
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122001.3 → NP_197494.1  Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197494.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q941D3
      UniProtKB/TrEMBL
      A0A178UEH3, A0A5S9Y5Q3, A0A654G2P2
      Conserved Domains (1) summary
      pfam04755
      Location:67 → 235
      PAP_fibrillin

    2. NM_001161250.1 → NP_001154722.1  Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154722.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEH3, A0A5S9Y5Q3, F4K2P2
      Conserved Domains (1) summary
      pfam04755
      Location:67 → 223
      PAP_fibrillin; PAP_fibrillin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q941D3.1

    Gene LinkOut

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