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    Peptidyl-tRNA hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832103, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Peptidyl-tRNA hydrolase family protein
    Primary source
    TAIR:AT5G19830
    Locus tag
    AT5G19830
    See related
    Araport:AT5G19830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T29J13.250; T29J13_250
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (6703082..6705249)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Proline-rich extensin-like family protein Neighboring gene ARM repeat superfamily protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_121988.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables aminoacyl-tRNA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Peptidyl-tRNA hydrolase family protein
    NP_197484.4
    • Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 7915 Blast hits to 7912 proteins in 2585 species: Archae - 0; Bacteria - 5291; Metazoa - 47; Fungi - 78; Plants - 126; Viruses - 0; Other Eukaryotes - 2373 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6703082..6705249
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121988.6 → NP_197484.4  Peptidyl-tRNA hydrolase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197484.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NLS8
      UniProtKB/TrEMBL
      A0A178UFB4, A0A5S9Y6L0
      Conserved Domains (1) summary
      cd02406
      Location:17 → 207
      CRS2; Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast. CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NLS8.1

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