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    CD2-binding protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830798, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CD2-binding protein-like protein
    Primary source
    TAIR:AT5G09390
    Locus tag
    AT5G09390
    See related
    Araport:AT5G09390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5E8.190; T5E8_190
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (2913482..2915979)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene RNA polymerase III RPC4 Neighboring gene K+ uptake permease 7 Neighboring gene ethylene induced calmodulin binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036782.1
    NM_120975.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    part_of U5 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CD2-binding protein-like protein
    NP_001031859.1
    • CD2-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.2); Has 985 Blast hits to 963 proteins in 202 species: Archae - 8; Bacteria - 24; Metazoa - 477; Fungi - 147; Plants - 129; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).
    NP_568211.1
    • CD2-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2913482..2915979
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120975.3 → NP_568211.1  CD2-binding protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568211.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEI7, Q8L4S3, Q9FY76
      Conserved Domains (2) summary
      cd16074
      Location:294 → 301
      OCRE; OCRE repeat 1 [structural motif]
      cl23757
      Location:294 → 342
      OCRE; OCRE domain

    2. NM_001036782.1 → NP_001031859.1  CD2-binding protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031859.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KCL2, Q9FY76
      Conserved Domains (2) summary
      cd16074
      Location:294 → 301
      OCRE; OCRE repeat 1 [structural motif]
      cl23757
      Location:294 → 340
      OCRE; OCRE domain
    Nucleotide Protein
    Heading Accession and Version

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