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    MYB54 myb domain protein 54 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843676, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB54
    Official Full Name
    myb domain protein 54
    Primary source
    TAIR:AT1G73410
    Locus tag
    AT1G73410
    See related
    Araport:AT1G73410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54; ATMYB54; BW54; myb domain protein 54; T9L24.38; T9L24_38
    Summary
    Encodes a putative transcription factor that is a member of the R2R3-MYB family.
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    Genomic context

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    See MYB54 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (27601593..27603317)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Endosomal targeting BRO1-like domain-containing protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene sec34-like family protein Neighboring gene calmodulin-like protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. Kranz HD, et al. Plant J, 1998 Oct. PMID 9839469
    2. A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis. Zhong R, et al. Plant Cell, 2008 Oct. PMID 18952777, Free PMC Article
    3. Enhanced Y1H assays for Arabidopsis. Gaudinier A, et al. Nat Methods, 2011 Oct 30. PMID 22037706, Free PMC Article
    4. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
    5. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001334595.1
    NM_106001.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of secondary cell wall biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 54
    NP_177484.1
    • myb domain protein 54 (MYB54); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 52 (TAIR:AT1G17950.1); Has 8946 Blast hits to 8042 proteins in 555 species: Archae - 0; Bacteria - 0; Metazoa - 900; Fungi - 630; Plants - 5453; Viruses - 5; Other Eukaryotes - 1958 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27601593..27603317
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106001.3 → NP_177484.1  myb domain protein 54 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177484.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FX36, Q9ZTD7
      UniProtKB/TrEMBL
      A0A178WGB1, A0A5S9WU06
      Conserved Domains (1) summary
      PLN03091
      Location:6 → 113
      PLN03091; hypothetical protein; Provisional

    2. NM_001334595.1 → NP_001323143.1  myb domain protein 54 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WGG5, A0A1P8AW77, A0A384L3K9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FX36.1

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