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    PAHX phytanoyl-CoA dioxygenase (PhyH) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814677, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PAHX
    Official Full Name
    phytanoyl-CoA dioxygenase (PhyH) family protein
    Primary source
    TAIR:AT2G01490
    Locus tag
    AT2G01490
    See related
    Araport:AT2G01490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2I9.11; F2I9_11; phytanoyl-CoA 2-hydroxylase
    Summary
    Encodes a phytanoyl-CoA 2-hydroxylase (PAHX).
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    Genomic context

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    See PAHX in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (221013..223809)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene SEC12P-like 2 protein Neighboring gene O-fucosyltransferase family protein Neighboring gene Homeodomain-like superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene CLAVATA3/ESR-RELATED 16

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of a range of catabolic mutants provides evidence that phytanoyl-coenzyme A does not act as a substrate of the electron-transfer flavoprotein/electron-transfer flavoprotein:ubiquinone oxidoreductase complex in Arabidopsis during dark-induced senescence. Araújo WL, et al. Plant Physiol, 2011 Sep. PMID 21788362, Free PMC Article
    2. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
    3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001335065.1
    NM_126210.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phytanoyl-CoA dioxygenase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phytanoyl-CoA dioxygenase (PhyH) family protein
    NP_565262.1
    • phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      221013..223809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126210.4 → NP_565262.1  phytanoyl-CoA dioxygenase (PhyH) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565262.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LA19, Q93Z95, Q9ZVF6
      UniProtKB/TrEMBL
      A0A178VMV8, A0A5S9WWB5
      Conserved Domains (1) summary
      pfam05721
      Location:15 → 251
      PhyH; Phytanoyl-CoA dioxygenase (PhyH)

    2. NM_001335065.1 → NP_001325094.1  phytanoyl-CoA dioxygenase (PhyH) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LA19, Q93Z95, Q9ZVF6
      UniProtKB/TrEMBL
      A0A178VMV8, A0A5S9WWB5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZVF6.2

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