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    AGP2 arabinogalactan protein 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816779, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGP2
    Official Full Name
    arabinogalactan protein 2
    Primary source
    TAIR:AT2G22470
    Locus tag
    AT2G22470
    See related
    Araport:AT2G22470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    arabinogalactan protein 2; ARABINOGALACTAN-PROTEIN 2; ATAGP2; F14M13.13; F14M13_13
    Summary
    Encodes arabinogalactan-protein (AGP2).
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    Genomic context

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    See AGP2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (9538127..9538963, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene riboflavin biosynthesis protein Neighboring gene MIZU-KUSSEI-like protein (Protein of unknown function, DUF617) Neighboring gene uncharacterized protein Neighboring gene GRAM domain family protein Neighboring gene phosphofructokinase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
    2. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    3. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_127812.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    arabinogalactan protein 2
    NP_565537.1
    • arabinogalactan protein 2 (AGP2); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 3 (TAIR:AT4G40090.1); Has 40526 Blast hits to 18637 proteins in 1352 species: Archae - 307; Bacteria - 12509; Metazoa - 8294; Fungi - 3358; Plants - 6174; Viruses - 1616; Other Eukaryotes - 8268 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9538127..9538963 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127812.3 → NP_565537.1  arabinogalactan protein 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565537.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SJY7, Q9ZT18
      UniProtKB/TrEMBL
      A0A5S9X079, A0A654EWA6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJY7.1

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