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    translation initiation factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818261, updated on 18-Sep-2024

    Summary

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    Official Full Name
    translation initiation factor
    Primary source
    TAIR:AT2G36885
    Locus tag
    AT2G36885
    See related
    Araport:AT2G36885
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (15482003..15483788, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglucosylase/hydrolase 32 Neighboring gene methionine adenosyltransferase 3 Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene D-tagatose-1,6-bisphosphate aldolase subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_129244.4
    NM_201886.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    translation initiation factor
    NP_565853.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 172 Blast hits to 172 proteins in 58 species: Archae - 0; Bacteria - 116; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
    NP_973615.2
    • unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15482003..15483788 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129244.4 → NP_565853.1  translation initiation factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565853.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VR20, Q8S8F1
      Conserved Domains (1) summary
      pfam13301
      Location:124 → 256
      DUF4079; Protein of unknown function (DUF4079)

    2. NM_201886.2 → NP_973615.2  translation initiation factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973615.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IP26
      Conserved Domains (1) summary
      pfam13301
      Location:127 → 255
      DUF4079; Protein of unknown function (DUF4079)
    Nucleotide Protein
    Heading Accession and Version

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