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    winged-helix DNA-binding transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841867, updated on 18-Sep-2024

    Summary

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    Official Full Name
    winged-helix DNA-binding transcription factor family protein
    Primary source
    TAIR:AT1G54260
    Locus tag
    AT1G54260
    See related
    Araport:AT1G54260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D21.8; F20D21_8
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (20256936..20259417)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene winged-helix DNA-binding transcription factor family protein Neighboring gene RNA polymerase Rpb8 Neighboring gene eif4a-2 Neighboring gene ncRNA Neighboring gene ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_104304.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables double-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    winged-helix DNA-binding transcription factor family protein
    NP_175828.1
    • winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: Homeodomain-like/winged-helix DNA-binding family protein (TAIR:AT1G72740.2); Has 393 Blast hits to 393 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 391; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20256936..20259417
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104304.4 → NP_175828.1  winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175828.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HV94
      Conserved Domains (1) summary
      smart00526
      Location:7 → 65
      H15; Domain in histone families 1 and 5
    Nucleotide Protein
    Heading Accession and Version

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