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    GLE1 nucleoporin GLE1-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837869, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GLE1
    Official Full Name
    nucleoporin GLE1-like protein
    Primary source
    TAIR:AT1G13120
    Locus tag
    AT1G13120
    See related
    Araport:AT1G13120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    A. thaliana homolog of yeast GLE1; AtGLE1; embryo defective 1745; F3F19.14; F3F19_14
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    Genomic context

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    See GLE1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (4469144..4473319, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 71, subfamily B, polypeptide 29 Neighboring gene cytochrome P450, family 71 subfamily B, polypeptide 7 Neighboring gene Cellulase (glycosyl hydrolase family 5) protein Neighboring gene cytochrome P450, family 86, subfamily C, polypeptide 3 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. InsP6-sensitive variants of the Gle1 mRNA export factor rescue growth and fertility defects of the ipk1 low-phytic-acid mutation in Arabidopsis. Lee HS, et al. Plant Cell, 2015 Feb. PMID 25670768, Free PMC Article
    2. LONO1 encoding a nucleoporin is required for embryogenesis and seed viability in Arabidopsis. Braud C, et al. Plant Physiol, 2012 Oct. PMID 22898497, Free PMC Article
    3. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_101182.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within seed development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nucleoporin GLE1-like protein
    NP_172771.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GLE1-like (InterPro:IPR012476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G05523.1); Has 36705 Blast hits to 24548 proteins in 2114 species: Archae - 242; Bacteria - 8583; Metazoa - 12421; Fungi - 3107; Plants - 1525; Viruses - 221; Other Eukaryotes - 10606 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4469144..4473319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101182.4 → NP_172771.1  nucleoporin GLE1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172771.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WPZ7, Q9SAE5
      UniProtKB/TrEMBL
      A0A654EAX7
      Conserved Domains (2) summary
      pfam07817
      Location:330 → 536
      GLE1; GLE1-like protein
      cl21478
      Location:194 → 319
      ATP-synt_B; ATP synthase B/B' CF(0)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WPZ7.1

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