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    wound-responsive family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838762, updated on 18-Sep-2024

    Summary

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    Official Full Name
    wound-responsive family protein
    Primary source
    TAIR:AT1G21610
    Locus tag
    AT1G21610
    See related
    Araport:AT1G21610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24J8.24; Ubinuclein 1; UBN1
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (7573830..7578963)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein Neighboring gene kinase with adenine nucleotide alpha hydrolases-like domain-containing protein Neighboring gene plastid transcriptionally active 6 Neighboring gene pumilio 20 Neighboring gene Calcium-binding EF hand family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The histone chaperone complex HIR maintains nucleosome occupancy and counterbalances impaired histone deposition in CAF-1 complex mutants. Duc C, et al. Plant J, 2015 Mar. PMID 25600486
    2. The HIRA complex that deposits the histone H3.3 is conserved in Arabidopsis and facilitates transcriptional dynamics. Nie X, et al. Biol Open, 2014 Aug 1. PMID 25086063, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001198126.1
    NM_102010.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of gene expression, epigenetic IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in nucleosome organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in rDNA protrusion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    wound-responsive family protein
    NP_001185055.1
    • wound-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1).
    NP_173580.2
    • wound-responsive family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1); Has 560 Blast hits to 534 proteins in 143 species: Archae - 0; Bacteria - 34; Metazoa - 261; Fungi - 64; Plants - 78; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
    NP_973880.1
    • wound-responsive family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7573830..7578963
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332522.1 → NP_001321247.1  wound-responsive family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQC6

    2. NM_202151.3 → NP_973880.1  wound-responsive family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973880.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9VI65, A0A654EBR3, F4HY30
      Conserved Domains (1) summary
      pfam08729
      Location:114 → 164
      HUN; HPC2 and ubinuclein domain

    3. NM_001332521.1 → NP_001321246.1  wound-responsive family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQD7

    4. NM_001332523.1 → NP_001321248.1  wound-responsive family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQC6

    5. NM_102010.5 → NP_173580.2  wound-responsive family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173580.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RX78, Q9XI18
      UniProtKB/TrEMBL
      A0A178WFR5, A0A5S9VI65
      Conserved Domains (1) summary
      pfam08729
      Location:114 → 164
      HUN; HPC2 and ubinuclein domain

    6. NM_001198126.1 → NP_001185055.1  wound-responsive family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185055.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9VI65, F4HY28
      Conserved Domains (1) summary
      pfam08729
      Location:119 → 164
      HUN; HPC2 and ubinuclein domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RX78.1

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