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    zinc finger protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839310, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc finger protein-like protein
    Primary source
    TAIR:AT1G01930
    Locus tag
    AT1G01930
    See related
    Araport:AT1G01930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22M8.6; F22M8_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (319769..322895, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene SET domain-containing protein Neighboring gene Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene armadillo repeat kinesin 2 Neighboring gene SEC7-like guanine nucleotide exchange family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100073.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein-like protein
    NP_563641.1
    • zinc finger protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); Has 1975 Blast hits to 1659 proteins in 367 species: Archae - 3; Bacteria - 303; Metazoa - 582; Fungi - 382; Plants - 105; Viruses - 11; Other Eukaryotes - 589 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      319769..322895 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100073.3 → NP_563641.1  zinc finger protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563641.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFV1, A0A7G2DQL1, Q9LPC8
      Conserved Domains (4) summary
      sd00020
      Location:74 → 96
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00045
      Location:424 → 452
      ANK; ANK repeat [structural motif]
      pfam18826
      Location:222 → 363
      bVLRF1; bacteroidetes VLRF1 release factor
      cl39094
      Location:426 → 462
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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