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    SEC5B Exocyst complex component SEC5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838713, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SEC5B
    Official Full Name
    Exocyst complex component SEC5
    Primary source
    TAIR:AT1G21170
    Locus tag
    AT1G21170
    See related
    Araport:AT1G21170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See SEC5B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    21
    Sequence:
    Chromosome: 1; NC_003070.9 (7412830..7419643)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Vacuolar iron transporter (VIT) family protein Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene eukaryotic translation initiation factor 2 (eIF-2) family protein Neighboring gene Small nuclear ribonucleoprotein family protein Neighboring gene sequence-specific DNA binding transcription factor Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An exocyst complex functions in plant cell growth in Arabidopsis and tobacco. Hála M, et al. Plant Cell, 2008 May. PMID 18492870, Free PMC Article
    2. RNA Silencing of Exocyst Genes in the Stigma Impairs the Acceptance of Compatible Pollen in Arabidopsis. Safavian D, et al. Plant Physiol, 2015 Dec. PMID 26443677, Free PMC Article
    3. bHLH05 is an interaction partner of MYB51 and a novel regulator of glucosinolate biosynthesis in Arabidopsis. Frerigmann H, et al. Plant Physiol, 2014 Sep. PMID 25049362, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001332488.1
    NM_101971.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in Golgi to plasma membrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within acceptance of pollen IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen germination IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen tube growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of exocyst IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Exocyst complex component SEC5
    NP_173541.1
    • SEC5B; BEST Arabidopsis thaliana protein match is: exocyst complex component sec5 (TAIR:AT1G76850.1); Has 822 Blast hits to 808 proteins in 207 species: Archae - 0; Bacteria - 24; Metazoa - 388; Fungi - 169; Plants - 124; Viruses - 8; Other Eukaryotes - 109 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7412830..7419643
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101971.3 → NP_173541.1  Exocyst complex component SEC5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173541.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HWE6, Q9LMN3, Q9LPV1
      UniProtKB/TrEMBL
      A0A178WNA9, A0A5S9VCW3, A0A654EBR6
      Conserved Domains (1) summary
      pfam15469
      Location:268 → 440
      Sec5; Exocyst complex component Sec5

    2. NM_001332488.1 → NP_001322652.1  Exocyst complex component SEC5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WNA9, A0A1P8AUR0, A0A5S9VCW3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4HWE6.1

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