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    RNA polymerase II transcription elongation factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843448, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA polymerase II transcription elongation factor
    Primary source
    TAIR:AT1G71080
    Locus tag
    AT1G71080
    See related
    Araport:AT1G71080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23N20.7; F23N20_7
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (26809720..26811848, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene Auxin efflux carrier family protein Neighboring gene Ribose 5-phosphate isomerase, type A protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana possesses two novel ELL associated factor homologs. Dabas P, et al. IUBMB Life, 2021 Sep. PMID 34089218
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis thaliana possesses two novel ELL associated factor homologs.
      Title: Arabidopsis thaliana possesses two novel ELL associated factor homologs.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_105777.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of super elongation complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase II transcription elongation factor
    NP_565010.1
    • RNA polymerase II transcription elongation factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eaf, ELL-associated factor (InterPro:IPR019194); BEST Arabidopsis thaliana protein match is: RNA polymerase II transcription elongation factor (TAIR:AT5G38050.1); Has 12853 Blast hits to 3725 proteins in 482 species: Archae - 50; Bacteria - 7340; Metazoa - 2093; Fungi - 1002; Plants - 180; Viruses - 45; Other Eukaryotes - 2143 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26809720..26811848 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105777.4 → NP_565010.1  RNA polymerase II transcription elongation factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565010.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMK6, Q9C9A0
      Conserved Domains (1) summary
      pfam09816
      Location:19 → 118
      EAF; RNA polymerase II transcription elongation factor
    Nucleotide Protein
    Heading Accession and Version

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