U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    pentatricopeptide (PPR) repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820912, updated on 18-Sep-2024

    Summary

    Official Full Name
    pentatricopeptide (PPR) repeat-containing protein
    Primary source
    TAIR:AT3G16610
    Locus tag
    AT3G16610
    See related
    Araport:AT3G16610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (5656215..5658335, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein Neighboring gene translocon outer complex protein 120 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene translationally controlled tumor protein

    General gene information

    NM_112534.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    is_active_in cellular_component  
    located_in mitochondrion  

    General protein information

    Preferred Names
    pentatricopeptide (PPR) repeat-containing protein
    NP_188283.1
    • pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 44074 Blast hits to 13558 proteins in 215 species: Archae - 0; Bacteria - 6; Metazoa - 87; Fungi - 74; Plants - 43358; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5656215..5658335 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112534.2 → NP_188283.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188283.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LUS3
      UniProtKB/TrEMBL
      A0A5S9XCR3, A0A654F8V5
      Conserved Domains (2) summary
      PLN03077
      Location:2 → 654
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:477 → 504
      PPR; PPR repeat [structural motif]
    External link. Please review our privacy policy.