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    PQ-loop repeat family protein / transmembrane family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818704, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PQ-loop repeat family protein / transmembrane family protein
    Primary source
    TAIR:AT2G41050
    Locus tag
    AT2G41050
    See related
    Araport:AT2G41050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T3K9.18; T3K9_18
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    13
    Sequence:
    Chromosome: 2; NC_003071.7 (17123182..17126484, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene WW domain-containing protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene ncRNA Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene pentatricopeptide (PPR) repeat protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001336886.1
    NM_001336887.1
    NM_001336888.1
    NM_180009.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PQ-loop repeat family protein / transmembrane family protein
    NP_850340.1
    • PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT4G36850.1); Has 930 Blast hits to 673 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 545; Plants - 89; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17123182..17126484 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336885.1 → NP_001324065.1  PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZ29

    2. NM_180009.2 → NP_850340.1  PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850340.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1D4, A0A5S9X607, Q8RXY4
      Conserved Domains (1) summary
      pfam04193
      Location:11 → 65
      PQ-loop; PQ loop repeat

    3. NM_001336888.1 → NP_001324062.1  PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1D4, A0A1P8AZ21, A0A5S9X607

    4. NM_001336887.1 → NP_001324063.1  PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYW6, A0A7G2EFG4
      Conserved Domains (1) summary
      pfam04193
      Location:206 → 265
      PQ-loop; PQ loop repeat

    5. NM_001336886.1 → NP_001324064.1  PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1D4, A0A5S9X607, Q8RXY4
      Conserved Domains (1) summary
      pfam04193
      Location:11 → 65
      PQ-loop; PQ loop repeat
    Nucleotide Protein
    Heading Accession and Version

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