U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    clast3-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821426, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    clast3-like protein
    Primary source
    TAIR:AT3G18940
    Locus tag
    AT3G18940
    See related
    Araport:AT3G18940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (6526734..6529173, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene EIN2 targeting protein2 Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene tRNA-Tyr

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_112780.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    clast3-like protein
    NP_566621.1
    • clast3-related; CONTAINS InterPro DOMAIN/s: Proteasome assembly chaperone 2, eukaryotic (InterPro:IPR016562), Proteasome assembly chaperone 2 (InterPro:IPR019151); Has 249 Blast hits to 248 proteins in 114 species: Archae - 1; Bacteria - 0; Metazoa - 124; Fungi - 51; Plants - 58; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6526734..6529173 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112780.4 → NP_566621.1  clast3-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566621.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF98, A0A5S9XDH9, A0A654F9K9, Q8L9C1, Q9LJ72
      Conserved Domains (1) summary
      pfam09754
      Location:18 → 123
      PAC2; PAC2 family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools