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    LARP6c RNA-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821444, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LARP6c
    Official Full Name
    RNA-binding protein
    Primary source
    TAIR:AT3G19090
    Locus tag
    AT3G19090
    See related
    Araport:AT3G19090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtLARP6c; La related protein 6c
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    Genomic context

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    See LARP6c in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (6601279..6604010)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SWIB complex BAF60b domain-containing protein Neighboring gene F-box/RNI/FBD-like domain protein Neighboring gene Protein kinase superfamily protein Neighboring gene PIF / Ping-Pong family of plant transposase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LARP6C orchestrates posttranscriptional reprogramming of gene expression during hydration to promote pollen tube guidance. Billey E, et al. Plant Cell, 2021 Aug 31. PMID 34124761, Free PMC Article
    2. The association of a La module with the PABP-interacting motif PAM2 is a recurrent evolutionary process that led to the neofunctionalization of La-related proteins. Merret R, et al. RNA, 2013 Jan. PMID 23148093, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LARP6C orchestrates posttranscriptional reprogramming of gene expression during hydration to promote pollen tube guidance.
      Title: LARP6C orchestrates posttranscriptional reprogramming of gene expression during hydration to promote pollen tube guidance.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001338382.1
    NM_112796.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA 5'-UTR binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pollen germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen tube guidance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding protein
    NP_188540.1
    • RNA-binding protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT2G43970.1); Has 912 Blast hits to 912 proteins in 142 species: Archae - 0; Bacteria - 2; Metazoa - 538; Fungi - 65; Plants - 233; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6601279..6604010
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112796.2 → NP_188540.1  RNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188540.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LHL3
      UniProtKB/TrEMBL
      A0A5S9XE51, A0A654F8M9
      Conserved Domains (2) summary
      cd08033
      Location:145 → 221
      LARP_6; La RNA-binding domain of La-related protein 6
      cd12288
      Location:236 → 323
      RRM_La_like_plant; RNA recognition motif (RRM) found in plant proteins related to the La autoantigen

    2. NM_001338382.1 → NP_001325674.1  RNA-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLZ1, A0A654F8M9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LHL3.1

    Gene LinkOut

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