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    Ribosomal protein S7e family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841305, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein S7e family protein
    Primary source
    TAIR:AT1G48830
    Locus tag
    AT1G48830
    See related
    Araport:AT1G48830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11I4.1; F11I4_1
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (18059450..18061302, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Terpenoid cyclases/Protein prenyltransferases superfamily protein Neighboring gene pseudo Neighboring gene Terpenoid cyclases/Protein prenyltransferases superfamily protein Neighboring gene heat-inducible transcription repressor (DUF639) Neighboring gene chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase Neighboring gene RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Siodmak A, et al. Nucleic Acids Res, 2023 Nov 27. PMID 37823590, Free PMC Article
    2. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    3. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    4. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
    5. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_103777.4
    NM_179455.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosolic ribosome HDA PubMed 
    part_of cytosolic small ribosomal subunit HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein S7e family protein
    NP_175314.1
    • Ribosomal protein S7e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: Ribosomal protein S7e family protein (TAIR:AT3G02560.2); Has 785 Blast hits to 785 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 354; Fungi - 147; Plants - 158; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).
    NP_849786.1
    • Ribosomal protein S7e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: Ribosomal protein S7e family protein (TAIR:AT3G02560.2); Has 785 Blast hits to 785 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 354; Fungi - 147; Plants - 158; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18059450..18061302 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103777.4 → NP_175314.1  Ribosomal protein S7e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175314.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C514
      UniProtKB/TrEMBL
      A0A178WGF0, A0A5S9WK66
      Conserved Domains (1) summary
      pfam01251
      Location:7 → 187
      Ribosomal_S7e; Ribosomal protein S7e

    2. NM_179455.3 → NP_849786.1  Ribosomal protein S7e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849786.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C514
      UniProtKB/TrEMBL
      A0A178WGF0, A0A5S9WK66
      Conserved Domains (1) summary
      pfam01251
      Location:7 → 187
      Ribosomal_S7e; Ribosomal protein S7e
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C514.1

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