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    SWAP/surp RNA-binding domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838385, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWAP/surp RNA-binding domain protein
    Primary source
    TAIR:AT1G18050
    Locus tag
    AT1G18050
    See related
    Araport:AT1G18050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10F20.6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (6209771..6211588, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2C family protein Neighboring gene ncRNA Neighboring gene cyclin-dependent kinase D1;3 Neighboring gene ncRNA Neighboring gene microbial collagenase Neighboring gene Translation elongation factor EF1A/initiation factor IF2gamma family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SWAP/surp RNA-binding domain protein
    NP_001319032.1
    • SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30370.1); Has 226 Blast hits to 225 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 11; Plants - 84; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6209771..6211588 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332333.1 → NP_001319032.1  SWAP/surp RNA-binding domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ECC6, F4IAL8
      Conserved Domains (1) summary
      smart00648
      Location:155 → 203
      SWAP; Suppressor-of-White-APricot splicing regulator
    Nucleotide Protein
    Heading Accession and Version

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