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    ABC1 ABC transporter 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828127, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ABC1
    Official Full Name
    ABC transporter 1
    Primary source
    TAIR:AT4G01660
    Locus tag
    AT4G01660
    See related
    Araport:AT4G01660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ABC transporter 1; ATABC1; ATATH10; T15B16.14; T15B16_14
    Summary
    Encodes an ABC1-like protein, member of the ATH subfamily; putative ABC transporter; isolated by functional complementation of a yeast abc1 mutant
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    Genomic context

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    See ABC1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (708357..711256)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene Polyketide cyclase / dehydrase and lipid transport protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation of an Arabidopsis thaliana cDNA by complementation of a yeast abc1 deletion mutant deficient in complex III respiratory activity. Cardazzo B, et al. Gene, 1998 Oct 9. PMID 9852956
    2. AtACDO1, an ABC1-like kinase gene, is involved in chlorophyll degradation and the response to photooxidative stress in Arabidopsis. Yang S, et al. J Exp Bot, 2012 Jun. PMID 22447966
    3. A UV-B-specific signaling component orchestrates plant UV protection. Brown BA, et al. Proc Natl Acad Sci U S A, 2005 Dec 13. PMID 16330762, Free PMC Article
    4. CONSTITUTIVELY PHOTOMORPHOGENIC1 is required for the UV-B response in Arabidopsis. Oravecz A, et al. Plant Cell, 2006 Aug. PMID 16829591, Free PMC Article
    5. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_116396.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within chlorophyll catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cytochrome complex assembly IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in response to UV-B IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in ubiquinone biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ubiquinone biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    ABC transporter 1
    NP_192075.1
    • ABC transporter 1 (ABC1); CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2); Has 8616 Blast hits to 8614 proteins in 1786 species: Archae - 122; Bacteria - 4355; Metazoa - 377; Fungi - 416; Plants - 667; Viruses - 9; Other Eukaryotes - 2670 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      708357..711256
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116396.4 → NP_192075.1  ABC transporter 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192075.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65576, Q9SBB2
      UniProtKB/TrEMBL
      A0A178V478, A0A5S9XP00
      Conserved Domains (1) summary
      cd13970
      Location:260 → 510
      ABC1_ADCK3; Activator of bc1 complex (ABC1) kinases, also called aarF domain containing kinase 3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SBB2.1

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