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    spatacsin carboxy-terminus protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830097, updated on 18-Sep-2024

    Summary

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    Official Full Name
    spatacsin carboxy-terminus protein
    Primary source
    TAIR:AT4G39420
    Locus tag
    AT4G39420
    See related
    Araport:AT4G39420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23K16.50; F23K16_50
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    26
    Sequence:
    Chromosome: 4; NC_003075.7 (18339127..18355149)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene WRKY DNA-binding protein 13 Neighboring gene S-adenosylmethionine carrier 1 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001342542.1
    NM_120102.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    spatacsin carboxy-terminus protein
    NP_001154293.2
    • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 20 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_195652.5
    • unknown protein; Has 46 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18339127..18355149
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160821.3 → NP_001154293.2  spatacsin carboxy-terminus protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154293.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4C4, F4JW20
      Conserved Domains (1) summary
      pfam14649
      Location:2801 → 3094
      Spatacsin_C; Spatacsin C-terminus

    2. NM_001342541.1 → NP_001328120.1  spatacsin carboxy-terminus protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3P8

    3. NM_120102.7 → NP_195652.5  spatacsin carboxy-terminus protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195652.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JW21
      Conserved Domains (1) summary
      pfam14649
      Location:2130 → 2423
      Spatacsin_C; Spatacsin C-terminus

    4. NM_001342542.1 → NP_001328119.1  spatacsin carboxy-terminus protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4C4, A0A1P8B3N6
    Nucleotide Protein
    Heading Accession and Version

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