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    DNA-directed RNA polymerase II subunit RPB1-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824224, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA-directed RNA polymerase II subunit RPB1-like protein
    Primary source
    TAIR:AT3G50610
    Locus tag
    AT3G50610
    See related
    Araport:AT3G50610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (18779551..18780514, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The CEP family in land plants: evolutionary analyses, expression studies, and role in Arabidopsis shoot development. Roberts I, et al. J Exp Bot, 2013 Dec. PMID 24179095
    2. Perception of root-derived peptides by shoot LRR-RKs mediates systemic N-demand signaling. Tabata R, et al. Science, 2014 Oct 17. PMID 25324386
    3. CEP genes regulate root and shoot development in response to environmental cues and are specific to seed plants. Delay C, et al. J Exp Bot, 2013 Dec. PMID 24179096
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_114921.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hormone activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to nitrogen starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in nitrate import IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of lateral root development IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of leaf morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of root development IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to ammonium ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to nitrogen compound IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to osmotic stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to potassium ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in root development IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in apoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase II subunit RPB1-like protein
    NP_190630.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66816.1); Has 125 Blast hits to 60 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18779551..18780514 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339475.1 → NP_001325993.1  DNA-directed RNA polymerase II subunit RPB1-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LMX5, A0MF19, Q9SCR4
      UniProtKB/TrEMBL
      A0A5S9XJS8, A0A654FEM2

    2. NM_114921.1 → NP_190630.1  DNA-directed RNA polymerase II subunit RPB1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190630.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFC6, A0A5S9XJS8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A1I9LMX5.1

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