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    transcriptional activator (DUF662) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824458, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcriptional activator (DUF662)
    Primary source
    TAIR:AT3G52920
    Locus tag
    AT3G52920
    See related
    Araport:AT3G52920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (19624278..19626347)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RAB6-interacting golgin (DUF662) Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene growth-regulating factor 4 Neighboring gene Aldolase superfamily protein Neighboring gene Ergosterol biosynthesis ERG4/ERG24 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    2. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_115152.3
    NM_180357.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcriptional activator (DUF662)
    NP_566974.1
    • Family of unknown function (DUF662); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT2G36410.1); Has 2850 Blast hits to 2486 proteins in 375 species: Archae - 84; Bacteria - 284; Metazoa - 1164; Fungi - 182; Plants - 322; Viruses - 9; Other Eukaryotes - 805 (source: NCBI BLink).
    NP_850688.1
    • Family of unknown function (DUF662); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT2G36410.2); Has 3173 Blast hits to 2602 proteins in 396 species: Archae - 87; Bacteria - 336; Metazoa - 1447; Fungi - 184; Plants - 193; Viruses - 5; Other Eukaryotes - 921 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19624278..19626347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115152.3 → NP_566974.1  transcriptional activator (DUF662) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566974.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VHH0, A0A384L4Z9, Q8L9S7
      Conserved Domains (1) summary
      pfam04949
      Location:22 → 165
      Transcrip_act; Transcriptional activator

    2. NM_180357.3 → NP_850688.1  transcriptional activator (DUF662) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850688.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJB7, A0A384L6H1, Q9LF99
      Conserved Domains (1) summary
      pfam04949
      Location:22 → 162
      Transcrip_act; Transcriptional activator
    Nucleotide Protein
    Heading Accession and Version

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