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    PME61 pectin methylesterase 61 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825070, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PME61
    Official Full Name
    pectin methylesterase 61
    Primary source
    TAIR:AT3G59010
    Locus tag
    AT3G59010
    See related
    Araport:AT3G59010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    pectin methylesterase 35; pectin methylesterase 61; PME35
    Summary
    Encodes PME35, a pectin methylesterase. PME35-mediated demethylesterification of the primary cell wall regulates the mechanical strength of the supporting tissue.
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    Genomic context

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    See PME61 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (21802770..21805335, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene isopropylmalate isomerase 1 Neighboring gene F-box/RNI-like superfamily protein Neighboring gene ARM repeat superfamily protein Neighboring gene MATE efflux family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Demethylesterification of the primary wall by PECTIN METHYLESTERASE35 provides mechanical support to the Arabidopsis stem. Hongo S, et al. Plant Cell, 2012 Jun. PMID 22693281, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_115763.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables enzyme inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pectinesterase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pectin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pectin methylesterase 61
    NP_191460.1
    • pectin methylesterase 61 (PME61); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G43050.1); Has 2708 Blast hits to 2657 proteins in 324 species: Archae - 6; Bacteria - 591; Metazoa - 1; Fungi - 200; Plants - 1884; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21802770..21805335 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115763.3 → NP_191460.1  pectin methylesterase 61 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191460.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LYT5
      UniProtKB/TrEMBL
      A0A178V613, A0A5S9XM67
      Conserved Domains (1) summary
      PLN02170
      Location:2 → 529
      PLN02170; probable pectinesterase/pectinesterase inhibitor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYT5.1

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