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    CSY5 citrate synthase 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825180, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CSY5
    Official Full Name
    citrate synthase 5
    Primary source
    TAIR:AT3G60100
    Locus tag
    AT3G60100
    See related
    Araport:AT3G60100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    citrate synthase 5
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    Genomic context

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    See CSY5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    19
    Sequence:
    Chromosome: 3; NC_003074.8 (22192730..22196447)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene VQ motif-containing protein Neighboring gene ncRNA Neighboring gene DNA-binding bromodomain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115873.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables citrate (Si)-synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in citrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in tricarboxylic acid cycle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    citrate synthase 5
    NP_191569.2
    • citrate synthase 5 (CSY5); FUNCTIONS IN: citrate (SI)-synthase activity, transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer; INVOLVED IN: cellular carbohydrate metabolic process, tricarboxylic acid cycle; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase, eukaryotic (InterPro:IPR010109), Citrate synthase-like (InterPro:IPR002020), Citrate synthase active site (InterPro:IPR019810), Citrate synthase-like, core (InterPro:IPR016141); BEST Arabidopsis thaliana protein match is: Citrate synthase family protein (TAIR:AT2G44350.1); Has 10430 Blast hits to 10424 proteins in 2755 species: Archae - 158; Bacteria - 6931; Metazoa - 258; Fungi - 314; Plants - 178; Viruses - 0; Other Eukaryotes - 2591 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22192730..22196447
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340022.1 → NP_001327513.1  citrate synthase 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSJ6, A0A5S9XMM1, A0A654FJE5

    2. NM_001340023.1 → NP_001327512.1  citrate synthase 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSJ5, A0A5S9XMM1, A0A654FJE5

    3. NM_115873.3 → NP_191569.2  citrate synthase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191569.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JAL9, Q9M1D3
      UniProtKB/TrEMBL
      A0A5S9XMM1, A0A654FJE5
      Conserved Domains (2) summary
      PLN02456
      Location:5 → 463
      PLN02456; citrate synthase
      cl00416
      Location:37 → 458
      CS_ACL-C_CCL; Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1D3.2

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