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    NEF1 no exine formation 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831180, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NEF1
    Official Full Name
    no exine formation 1
    Primary source
    TAIR:AT5G13390
    Locus tag
    AT5G13390
    See related
    Araport:AT5G13390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    NO EXINE FORMATION 1; T22N19.40; T22N19_40
    Summary
    Required for normal pollen development and lipid accumulation within the tapetum
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    Genomic context

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    See NEF1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (4292704..4296725)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Auxin-responsive GH3 family protein Neighboring gene Auxin-responsive GH3 family protein Neighboring gene Major facilitator superfamily protein Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene Aldolase-type TIM barrel family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001343271.1
    NM_121342.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    no exine formation 1
    NP_196843.1
    • NO EXINE FORMATION 1 (NEF1); LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4292704..4296725
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121342.4 → NP_196843.1  no exine formation 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196843.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGQ6, A0A5S9Y453, Q9LYR7

    2. NM_001343271.1 → NP_001331232.1  no exine formation 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BD81, A0A5S9Y453
    Nucleotide Protein
    Heading Accession and Version

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