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    CYL1 alpha-N-acetylglucosaminidase family / NAGLU family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831214, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CYL1
    Official Full Name
    alpha-N-acetylglucosaminidase family / NAGLU family
    Primary source
    TAIR:AT5G13690
    Locus tag
    AT5G13690
    See related
    Araport:AT5G13690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CYCLOPS 1; MSH12.16; MSH12_16; N-ACETYL-GLUCOSAMINIDASE; NAGLU
    Summary
    Encodes an enzyme that is predicted to act as an alpha-N-acetylglucosaminidase (NAGLU). An naglu mutant arrests early in seed development but does not appear to have male or female gametophytic defects. Transcript levels for this gene are increased during reproductive development.
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    Genomic context

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    See CYL1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    19
    Sequence:
    Chromosome: 5; NC_003076.8 (4415754..4420371)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene N-lysine methyltransferase Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene IKI3 family protein Neighboring gene polyamine oxidase 1 Neighboring gene sterol methyltransferase 1 Neighboring gene Uncharacterized protein family (UPF0114) Neighboring gene sigma factor 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The alpha-N-acetyl-glucosaminidase gene is transcriptionally activated in male and female gametes prior to fertilization and is essential for seed development in Arabidopsis. Ronceret A, et al. J Exp Bot, 2008. PMID 18782908
    2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-acetyl-glucosamines plays an important role in plant reproductive development.
      Title: The alpha-N-acetyl-glucosaminidase gene is transcriptionally activated in male and female gametes prior to fertilization and is essential for seed development in Arabidopsis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_001343290.1
    NM_121372.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables alpha-N-acetylglucosaminidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of cell division IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within seed development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    alpha-N-acetylglucosaminidase family / NAGLU family
    NP_196873.1
    • CYCLOPS 1 (CYL1); FUNCTIONS IN: alpha-N-acetylglucosaminidase activity; INVOLVED IN: seed development; LOCATED IN: vacuole; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-N-acetylglucosaminidase (InterPro:IPR007781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4415754..4420371
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121372.3 → NP_196873.1  alpha-N-acetylglucosaminidase family / NAGLU family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196873.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNA3
      UniProtKB/TrEMBL
      A0A5S9Y4J5
      Conserved Domains (3) summary
      pfam05089
      Location:158 → 495
      NAGLU; Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
      pfam12971
      Location:47 → 142
      NAGLU_N; Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain
      pfam12972
      Location:502 → 798
      NAGLU_C; Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain

    2. NM_001343290.1 → NP_001329969.1  alpha-N-acetylglucosaminidase family / NAGLU family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9A7, A0A7G2F871
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FNA3.1

    Gene LinkOut

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