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    phosphoglycerate/bisphosphoglycerate mutase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832325, updated on 18-Sep-2024

    Summary

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    Official Full Name
    phosphoglycerate/bisphosphoglycerate mutase family protein
    Primary source
    TAIR:AT5G22620
    Locus tag
    AT5G22620
    See related
    Araport:AT5G22620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MDJ22.4; MDJ22_4
    Summary
    encodes a putative 2-carboxy-D-arabinitol 1-phosphate phosphatase
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (7516949..7520281, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene FBD / Leucine Rich Repeat domains containing protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene arogenate dehydratase 5 Neighboring gene MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mining the soluble chloroplast proteome by affinity chromatography. Bayer RG, et al. Proteomics, 2011 Apr. PMID 21365755, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203437.2
    NM_122168.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 2-carboxy-D-arabinitol-1-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    phosphoglycerate/bisphosphoglycerate mutase family protein
    NP_001154730.1
    • phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase, active site (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT3G50520.1); Has 12570 Blast hits to 12455 proteins in 2295 species: Archae - 57; Bacteria - 9376; Metazoa - 676; Fungi - 332; Plants - 188; Viruses - 0; Other Eukaryotes - 1941 (source: NCBI BLink).
    NP_001190366.1
    • phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase, active site (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT3G50520.1).
    NP_197654.1
    • phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase, active site (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT3G50520.1); Has 12570 Blast hits to 12455 proteins in 2295 species: Archae - 57; Bacteria - 9376; Metazoa - 676; Fungi - 332; Plants - 188; Viruses - 0; Other Eukaryotes - 1941 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7516949..7520281 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343743.1 → NP_001330512.1  phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y6S6, A0A654G3F3, F4K9Y6
      Conserved Domains (2) summary
      PRK07238
      Location:360 → 450
      PRK07238; bifunctional RNase H/acid phosphatase; Provisional
      pfam00300
      Location:50 → 241
      His_Phos_1; Histidine phosphatase superfamily (branch 1)

    2. NM_001343744.1 → NP_001330513.1  phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNJ9
      UniProtKB/TrEMBL
      A0A5S9Y6S6, A0A654G3F3
      Conserved Domains (3) summary
      PRK07238
      Location:382 → 472
      PRK07238; bifunctional RNase H/acid phosphatase; Provisional
      pfam00300
      Location:50 → 241
      His_Phos_1; Histidine phosphatase superfamily (branch 1)
      cl11399
      Location:264 → 471
      HP; Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction

    3. NM_001343745.1 → NP_001330514.1  phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BB43, A0A5S9Y6S6, A0A654G3F3

    4. NM_001161258.1 → NP_001154730.1  phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154730.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNJ9
      UniProtKB/TrEMBL
      A0A5S9Y6S6, A0A654G3F3
      Conserved Domains (3) summary
      PRK07238
      Location:382 → 472
      PRK07238; bifunctional RNase H/acid phosphatase; Provisional
      pfam00300
      Location:50 → 241
      His_Phos_1; Histidine phosphatase superfamily (branch 1)
      cl11399
      Location:264 → 471
      HP; Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction

    5. NM_001203437.2 → NP_001190366.1  phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190366.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y6S6, A0A654G3F3, F4K9Y6
      Conserved Domains (2) summary
      PRK07238
      Location:360 → 450
      PRK07238; bifunctional RNase H/acid phosphatase; Provisional
      pfam00300
      Location:50 → 241
      His_Phos_1; Histidine phosphatase superfamily (branch 1)

    6. NM_122168.5 → NP_197654.1  phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197654.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNJ9
      UniProtKB/TrEMBL
      A0A5S9Y6S6, A0A654G3F3
      Conserved Domains (3) summary
      PRK07238
      Location:382 → 472
      PRK07238; bifunctional RNase H/acid phosphatase; Provisional
      pfam00300
      Location:50 → 241
      His_Phos_1; Histidine phosphatase superfamily (branch 1)
      cl11399
      Location:264 → 471
      HP; Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FNJ9.1

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