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    chromosome transmission fidelity-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835298, updated on 18-Sep-2024

    Summary

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    Official Full Name
    chromosome transmission fidelity-like protein
    Primary source
    TAIR:AT5G52220
    Locus tag
    AT5G52220
    See related
    Araport:AT5G52220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17P19.12; F17P19_12
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (21207097..21207716, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene homeodomain GLABROUS 7 Neighboring gene phosphoprotein phosphatase inhibitor Neighboring gene ncRNA Neighboring gene GTP-binding protein 1 Neighboring gene methyl-CPG-binding domain protein 13 Neighboring gene membrane steroid binding protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203590.1
    NM_124601.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitotic sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Ctf18 RFC-like complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    chromosome transmission fidelity-like protein
    NP_001190519.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607).
    NP_200035.4
    • CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607); Has 127 Blast hits to 127 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 17; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21207097..21207716 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203590.1 → NP_001190519.1  chromosome transmission fidelity-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190519.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UJQ2, A0A654GAF0, F4KEU5, Q9LTJ9
      Conserved Domains (1) summary
      pfam09696
      Location:15 → 111
      Ctf8

    2. NM_124601.5 → NP_200035.4  chromosome transmission fidelity-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200035.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GAF0, F4KEU4, Q9LTJ9
      Conserved Domains (1) summary
      pfam09696
      Location:15 → 111
      Ctf8; Ctf8
    Nucleotide Protein
    Heading Accession and Version

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