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    RabGAP/TBC domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835335, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RabGAP/TBC domain-containing protein
    Primary source
    TAIR:AT5G52580
    Locus tag
    AT5G52580
    See related
    Araport:AT5G52580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6N7.6; F6N7_6
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    16
    Sequence:
    Chromosome: 5; NC_003076.8 (21337861..21343051)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene stress response NST1-like protein Neighboring gene UDP-sugar pyrophosphorylase Neighboring gene beta-carotene hydroxylase 2 Neighboring gene myb domain protein 82 Neighboring gene Defensin-like (DEFL) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_124637.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RabGAP/TBC domain-containing protein
    NP_001190524.1
    • RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195), Protein of unknown function DUF3548 (InterPro:IPR021935); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G27100.2).
    NP_200071.2
    • RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195), Protein of unknown function DUF3548 (InterPro:IPR021935); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G28550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21337861..21343051
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203595.1 → NP_001190524.1  RabGAP/TBC domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190524.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YEI9, F4KG91
      Conserved Domains (2) summary
      pfam12068
      Location:47 → 183
      DUF3548; Domain of unknown function (DUF3548)
      smart00164
      Location:388 → 623
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

    2. NM_001345001.1 → NP_001331470.1  RabGAP/TBC domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BE11, A0A5S9YEI9
      Conserved Domains (2) summary
      smart00164
      Location:377 → 612
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
      pfam12068
      Location:47 → 188
      DUF3548; Domain of unknown function (DUF3548)

    3. NM_124637.3 → NP_200071.2  RabGAP/TBC domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200071.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBN8, A0A5S9YEI9, F4KG92
      Conserved Domains (2) summary
      smart00164
      Location:371 → 606
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
      pfam12068
      Location:47 → 182
      DUF3548; Domain of unknown function (DUF3548)
    Nucleotide Protein
    Heading Accession and Version

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