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    Actin binding Calponin homology (CH) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835633, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Actin binding Calponin homology (CH) domain-containing protein
    Primary source
    TAIR:AT5G55400
    Locus tag
    AT5G55400
    See related
    Araport:AT5G55400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MTE17.11; MTE17_11
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    15
    Sequence:
    Chromosome: 5; NC_003076.8 (22455369..22459598, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene MBOAT (membrane bound O-acyl transferase) family protein Neighboring gene ENHANCED DOWNY MILDEW 2 Neighboring gene miscRNA Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Fimbrins 4 and 5 Act Synergistically During Polarized Pollen Tube Growth to Ensure Fertility in Arabidopsis. Su H, et al. Plant Cell Physiol, 2017 Nov 1. PMID 29036437
    2. The Structurally Plastic CH2 Domain Is Linked to Distinct Functions of Fimbrins/Plastins. Zhang R, et al. J Biol Chem, 2016 Aug 19. PMID 27261463, Free PMC Article
    3. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001345124.1
    NM_001345125.1
    NM_001345126.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within actin filament bundle assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within actin filament network formation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Actin binding Calponin homology (CH) domain-containing protein
    NP_001318801.1
    • Actin binding Calponin homology (CH) domain-containing protein; FUNCTIONS IN: actin binding; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: fimbrin 1 (TAIR:AT4G26700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22455369..22459598 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345124.1 → NP_001318801.1  Actin binding Calponin homology (CH) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FJ70
      UniProtKB/TrEMBL
      A0A178UCZ0, A0A5S9YE93, A0A654GB51
      Conserved Domains (4) summary
      cd21293
      Location:125 → 240
      CH_AtFIM_like_rpt1; first calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family
      cd21296
      Location:261 → 369
      CH_AtFIM_like_rpt2; second calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family
      cd21299
      Location:391 → 504
      CH_AtFIM_like_rpt3; third calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family
      cd21302
      Location:514 → 622
      CH_AtFIM_like_rpt4; fourth calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family

    2. NM_001345125.1 → NP_001332485.1  Actin binding Calponin homology (CH) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FJ70
      UniProtKB/TrEMBL
      A0A178UCZ0, A0A5S9YE93, A0A654GB51
      Conserved Domains (4) summary
      cd21293
      Location:125 → 240
      CH_AtFIM_like_rpt1; first calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family
      cd21296
      Location:261 → 369
      CH_AtFIM_like_rpt2; second calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family
      cd21299
      Location:391 → 504
      CH_AtFIM_like_rpt3; third calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family
      cd21302
      Location:514 → 622
      CH_AtFIM_like_rpt4; fourth calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family

    3. NM_001345126.1 → NP_001332484.1  Actin binding Calponin homology (CH) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FJ70
      UniProtKB/TrEMBL
      A0A178UCZ0, A0A5S9YE93, A0A654GB51
      Conserved Domains (4) summary
      cd21293
      Location:125 → 240
      CH_AtFIM_like_rpt1; first calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family
      cd21296
      Location:261 → 369
      CH_AtFIM_like_rpt2; second calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family
      cd21299
      Location:391 → 504
      CH_AtFIM_like_rpt3; third calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family
      cd21302
      Location:514 → 622
      CH_AtFIM_like_rpt4; fourth calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FJ70.1

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