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    ribosomal RNA small subunit methyltransferase G [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835902, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ribosomal RNA small subunit methyltransferase G
    Primary source
    TAIR:AT5G57910
    Locus tag
    AT5G57910
    See related
    Araport:AT5G57910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MTI20.17; MTI20_17
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (23451066..23452963, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Glutamine amidotransferase type 1 family protein Neighboring gene ncRNA Neighboring gene SKP1 interacting partner 1 Neighboring gene early nodulin-like protein 10 Neighboring gene APO RNA-binding protein (DUF794)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. COMPASS functions as a module of the INO80 chromatin remodeling complex to mediate histone H3K4 methylation in Arabidopsis. Shang JY, et al. Plant Cell, 2021 Oct 11. PMID 34270751, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_125176.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    part_of Ino80 complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal RNA small subunit methyltransferase G
    NP_568871.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23451066..23452963 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345278.1 → NP_001330506.1  ribosomal RNA small subunit methyltransferase G [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGE9, A0A384L9E3, A0A5S9YHE1, Q8LBR2, Q9FJM4

    2. NM_125176.5 → NP_568871.1  ribosomal RNA small subunit methyltransferase G [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568871.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YHE1, A0A654GCJ7, Q8GW24, Q8LBR2
    Nucleotide Protein
    Heading Accession and Version

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